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Keio University
JP
6 researchers0 verified2 linked papers4,120 indexed citations
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2003 · Bioinformatics · 3,170 citations
The systems biology markup language (SBML): a medium forrepresentation and exchange of biochemical network models
MOTIVATION: Molecular biotechnology now makes it possible to build elaborate systems models, but the systems biology community needs information standards if models are to be shared, evaluated and developed cooperatively. RESULTS: We summarize the Systems Biology Markup Language (SBML) Level 1, a free, open, XML-based format for representing biochemical reaction networks. SBML is a software-independent language for describing models common to research in many areas of computational biology, including cell signaling pathways, metabolic pathways, gene regulation, and others. AVAILABILITY: The specification of SBML Level 1 is freely available from http://www.sbml.org/
2009 · Nature Biotechnology · 950 citations